Download

• Embryo TSS list (Excel) - 2013 Mar
• Adult TSS list (Excel) - 2013 Mar

5'SAGE Illumina single-end read (76bp)

• Embryo: read alignment BAM file, TSS peak data WIG file
• Adult: read alignment BAM file, TSS peak data WIG file

5'SAGE Illumina paired-end read (76bp-76bp)

• Embryo: read alignment BAM file

All raw reads are available in SRA (SRA060670)

Browsing with UCSC Genome Browser

To browse raw reads in UCSC Genome Browser, visit Manage Custom Tracks page, then add a custom track using the following track line:

track type=bam name="C.elegans 5'SAGE single-end"
      bigDataUrl=http://wormtss.utgenome.org/public/resources/2013-03/WE.all.bam

The above BAM files use chromosome names chrI, chrII, .... To browse their alignment in GBrowse (used in Wormbase or modENCODE), use BAM files in gbrowse folder with chromosome names I, II, ..., etc.